Query Information

ORIGIN plant
BEGIN
>MYSEQ
 NYTSDIHINF DNISFAKHKG GGNSVTCIMT KNILSIIKRL AKESTYDMNI
 NQCALVKKTN ILHQVSNIMD ALGQPYESES GRAATPLIPN IYQVPEVWAN
 PVRSGSPPPW VPPFLLPSSH QFSNRNLHPH EEDPARKDIT WRGGDGRGVA
 ARVEGMGAAA QELVP

Result Information

PSORT --- Prediction of Protein Localization Sites
                                            version 6.4(WWW)
MYSEQ          165 Residues
*** Warning: The 1st amino acid is not methionine
Species classification: 5

*** Reasoning Step: 1

Preliminary Calculation of ALOM (threshold: 0.5)
     count: 0
McG: Examining signal sequence (McGeoch)
     Length  of  UR:   5
     Peak Value of UR:   0.96
     Net Charge of CR: -1
     Discriminant Score:    -10.62
GvH: Examining signal sequence (von Heijne)
     Signal Score (-3.5): -8.96
     Possible cleavage site: 24
>>> Seems to have no N-terminal signal seq.
Amino Acid Composition of Predicted Mature Form:
   calculated from 1
ALOM new cnt: 0 ** thrshld changed to -2
Cleavable signal was detected in ALOM?: 0B
ALOM: finding transmembrane regions (Klein et al.)
     count: 0  value:   4.72  threshold: -2.0
     PERIPHERAL  Likelihood =  4.72
     modified ALOM score:  -1.84
( 4) or uncleavable?
Gavel: Examining the boundary of mitochondrial targeting seq.
      motif at: 4
     Uncleavable? Ipos set to: 14
Discrimination of mitochondrial target seq.: 
     negative (-4.72)
Hydrophobic moment analysis for chloroplast proteins 
     Hmax:  9.75 at (44)
Disc.Score from Amino Acid Composition (chloroplast)
     score from the 3-11 region:  2.91
     score from the 1-31 region:  7.22
Chloroplast protein?  Status: negative (-1.85)

*** Reasoning Step: 2

KDEL   Count: 0
Checking apolar signal for intramitochondrial sorting
Mitochondrial matrix?  Score:  0.10
Checking apolar signal for intrachloroplastic sorting
Howe: Checking the consensus for intrachloropl.sorting
SKL motif (signal for peroxisomal protein): 
     pos: -1(165), count: 0   
Amino Acid Composition Tendency for Peroxisome:  -2.65
Peroxisomal proteins?   Status: negative
Amino acid composition tendency for vacuolar proteins
     Score: -0.68  Status: negative
Checking the amount of Basic Residues (nucleus)
Checking the 4 residue pattern for Nuclear Targeting
Checking the 7 residue pattern for Nuclear Targeting
Checking the Robbins & Dingwall consensus (nucleus)
Checking the RNA binding motif (nucleus or cytoplasm)
Nuclear Signal   Status: negative ( 0.00)
Checking CaaX motif..
Checking N-myristoylation..
Checking CaaX motif..
Cytoplasmic protein?   Score2: 0.650

----- Final Results -----

                        cytoplasm --- Certainty= 0.650(Affirmative) < succ>
       mitochondrial matrix space --- Certainty= 0.100(Affirmative) < succ>
 endoplasmic reticulum (membrane) --- Certainty= 0.000(Not Clear) < succ>
    endoplasmic reticulum (lumen) --- Certainty= 0.000(Not Clear) < succ>


----- The End -----