Query Information

ORIGIN plant
BEGIN
>MYSEQ
 FFFFFLHSKI SSFLFDAQYP PEIPGYSQKT PGGNAMSGHS TSLTHMHSFG
 VKSLSTSITD GSVKKLYERR FQRGKLNNIY PQCRPTKQGF CFEGRSRLLG
 SFKLGGSIDS HHTHEPYQDD KEHYSDKGSF KKSFDALSVT FAQASFCTVS
 PLRKVPSHWR AGRVLQITRW LGSVENRVSS PRQLQQVDKL GKQLPFRFRG
 ALLEPAAAED DYISLSTRVG SS

Result Information

PSORT --- Prediction of Protein Localization Sites
                                            version 6.4(WWW)
MYSEQ          222 Residues
*** Warning: The 1st amino acid is not methionine
Species classification: 5

*** Reasoning Step: 1

Preliminary Calculation of ALOM (threshold: 0.5)
     count: 0
McG: Examining signal sequence (McGeoch)
     Length  of  UR:   6
     Peak Value of UR:   1.33
     Net Charge of CR: 2
     Discriminant Score:     -5.77
GvH: Examining signal sequence (von Heijne)
     Signal Score (-3.5): -3.44
     Possible cleavage site: 14
>>> Seems to have no N-terminal signal seq.
Amino Acid Composition of Predicted Mature Form:
   calculated from 1
ALOM new cnt: 0 ** thrshld changed to -2
Cleavable signal was detected in ALOM?: 0B
ALOM: finding transmembrane regions (Klein et al.)
     count: 0  value:   3.34  threshold: -2.0
     PERIPHERAL  Likelihood =  3.34
     modified ALOM score:  -1.57
(15) or uncleavable?
Gavel: Examining the boundary of mitochondrial targeting seq.
      motif at: 15
     Uncleavable? Ipos set to: 25
Discrimination of mitochondrial target seq.: 
     negative (-0.55)
Hydrophobic moment analysis for chloroplast proteins 
     Hmax:  9.78 at (52)
Disc.Score from Amino Acid Composition (chloroplast)
     score from the 3-11 region:  0.95
     score from the 1-31 region:  7.62
Chloroplast protein?  Status: negative (-3.41)

*** Reasoning Step: 2

KDEL   Count: 0
Checking apolar signal for intramitochondrial sorting
Mitochondrial matrix?  Score:  0.10
Checking apolar signal for intrachloroplastic sorting
Howe: Checking the consensus for intrachloropl.sorting
SKL motif (signal for peroxisomal protein): 
     pos: 96(222), count: 1   SRL
     SKL score (peroxisome):  0.3
Amino Acid Composition Tendency for Peroxisome:   7.74
Peroxisomal proteins?   Status: positive
     AAC score (peroxisome): 0.640
Amino acid composition tendency for vacuolar proteins
     Score: -3.42  Status: negative
Checking the amount of Basic Residues (nucleus)
Checking the 4 residue pattern for Nuclear Targeting
Checking the 7 residue pattern for Nuclear Targeting
Checking the Robbins & Dingwall consensus (nucleus)
Checking the RNA binding motif (nucleus or cytoplasm)
Nuclear Signal   Status: negative ( 0.00)
Checking CaaX motif..
Checking N-myristoylation..
Checking CaaX motif..

----- Final Results -----

           microbody (peroxisome) --- Certainty= 0.748(Affirmative) < succ>
       mitochondrial matrix space --- Certainty= 0.100(Affirmative) < succ>
 endoplasmic reticulum (membrane) --- Certainty= 0.000(Not Clear) < succ>
    endoplasmic reticulum (lumen) --- Certainty= 0.000(Not Clear) < succ>


----- The End -----