Query Information

ORIGIN plant
BEGIN
>MYSEQ
 ENCCSRRLCL PSFTDERNEK VGRKIITSLY WPIQDFGKKR RSSLPVRATR
 IIRCARISRV TTQEVLKSTR RTVTHGRTEC RFDLFGVPNQ NSGNISQNYT
 ESHHVQSSVE SSFGRSHLGK RRTQSRIPSA ILGSFLISRT RFFLRGVGLH
 HKSHQLKIIL YLGIYFSVLF IFIVFFACIF LTRCLISIHF KKRYLNNNEN
 IVIISLKIST SFTNIFGNFL IIFRVLKNEF R

Result Information

PSORT --- Prediction of Protein Localization Sites
                                            version 6.4(WWW)
MYSEQ          231 Residues
*** Warning: The 1st amino acid is not methionine
Species classification: 5

*** Reasoning Step: 1

Preliminary Calculation of ALOM (threshold: 0.5)
     count: 1
     Position of the most N-terminal TMS: 164 at i=1
MTOP: membrane topology (Hartmann et al.)
     I(middle): 171   Charge diffirence(C-N):  0.0
McG: Examining signal sequence (McGeoch)
     Length  of  UR:   7
     Peak Value of UR:   0.79
     Net Charge of CR: 1
     Discriminant Score:     -9.90
GvH: Examining signal sequence (von Heijne)
     Signal Score (-3.5): -4.96
     Possible cleavage site: 14
>>> Seems to have no N-terminal signal seq.
Amino Acid Composition of Predicted Mature Form:
   calculated from 1
ALOM new cnt: 1 ** thrshld changed to -2
Cleavable signal was detected in ALOM?: 0B
ALOM: finding transmembrane regions (Klein et al.)
     count: 1  value: -11.83  threshold: -2.0
     INTEGRAL    Likelihood =-11.83   Transmembrane  164 - 180 ( 155 - 190)
     PERIPHERAL  Likelihood =  1.27
     modified ALOM score:   2.47
>>> Seems to be a Type II (Ncyt Cexo) membrane protein
     The cytoplasmic tail is from 1 to 163 (163 Residues)
Gavel: Examining the boundary of mitochondrial targeting seq.
      motif at: 9
     RRLCLP
Discrimination of mitochondrial target seq.: 
     negative (-0.89)
Hydrophobic moment analysis for chloroplast proteins 
     Hmax:  8.80 at (40)
Disc.Score from Amino Acid Composition (chloroplast)
     score from the 3-11 region:  6.93
     score from the 1-31 region:  5.41
Chloroplast protein?  Status: notclr ( 0.08)

*** Reasoning Step: 2

Relative position of the cytoplasmic tail: 70%
     Larger value (>30%) is favared for ER memb. proteins
KDEL   Count: 0
Checking apolar signal for intramitochondrial sorting
Mitochondrial inner membrane?  Score:  0.10
Checking apolar signal for intrachloroplastic sorting
     found at (84-87):  3.5
Howe: Checking the consensus for intrachloropl.sorting
     Precursor 1-48  Score: 1146.88
Chloroplast thylakoid memb.?  Score: 0.740
SKL motif (signal for peroxisomal protein): 
     pos: 116(231), count: 1   SHL
     SKL score (peroxisome):  0.3
Amino Acid Composition Tendency for Peroxisome:   3.72
Peroxisomal proteins?   Status: positive
     AAC score (peroxisome): 0.563
Checking the cytoplasmic tail of type II (Golgi)
Amino acid composition tendency for vacuolar proteins
     Score: -4.24  Status: negative
Checking the amount of Basic Residues (nucleus)
Checking the 4 residue pattern for Nuclear Targeting
     Found: pos:  37 (5) KKRR
Checking the 7 residue pattern for Nuclear Targeting
Checking the Robbins & Dingwall consensus (nucleus)
Checking the RNA binding motif (nucleus or cytoplasm)
Nuclear Signal   Status: negative ( 0.15)
Check mitochondrial signal for typeII (plasma memb.)
Type II is favored for plasma memb. proteins
Checking the NPXY motif..
Checking the YXRF motif..
Checking N-myristoylation..

----- Final Results -----

 endoplasmic reticulum (membrane) --- Certainty= 0.850(Affirmative) < succ>
   chloroplast thylakoid membrane --- Certainty= 0.768(Affirmative) < succ>
           microbody (peroxisome) --- Certainty= 0.694(Affirmative) < succ>
                  plasma membrane --- Certainty= 0.440(Affirmative) < succ>


----- The End -----