Query Information

ORIGIN plant
BEGIN
>MYSEQ
 CPVVQMAYIP FHHCVNFHVA LHCCPFMTRR ATSGGGFDLR LWPWKRCQNS
 CRAWVPDWRL PERRDHVSRW PAMSSGDCTG YNCDVKKCIG CDEQGMSICR
 EVEPKLSVMP VLPKLPRHFE RSRRMVQFLV SMVLVCGAWS FQSIELHVNG
 SMLRWAERYS KGWARYPLSE PLSKPELPEP VPDLPESELT KHFGSVSKPK
 IILGTGHVSV PELPEI

Result Information

PSORT --- Prediction of Protein Localization Sites
                                            version 6.4(WWW)
MYSEQ          216 Residues
*** Warning: The 1st amino acid is not methionine
Species classification: 5

*** Reasoning Step: 1

Preliminary Calculation of ALOM (threshold: 0.5)
     count: 1
     Position of the most N-terminal TMS: 125 at i=1
MTOP: membrane topology (Hartmann et al.)
     I(middle): 132   Charge diffirence(C-N): -4.0
McG: Examining signal sequence (McGeoch)
     Length  of  UR:   10
     Peak Value of UR:   1.28
     Net Charge of CR: 0
     Discriminant Score:     -6.24
GvH: Examining signal sequence (von Heijne)
     Signal Score (-3.5): -4.14
     Possible cleavage site: 33
>>> Seems to have no N-terminal signal seq.
Amino Acid Composition of Predicted Mature Form:
   calculated from 1
ALOM new cnt: 1 ** thrshld changed to -2
Cleavable signal was detected in ALOM?: 0B
ALOM: finding transmembrane regions (Klein et al.)
     count: 1  value:  -2.55  threshold: -2.0
     INTEGRAL    Likelihood = -2.55   Transmembrane  125 - 141 ( 125 - 141)
     PERIPHERAL  Likelihood =  6.89
     modified ALOM score:   0.61
>>> Seems to be a Type II (Ncyt Cexo) membrane protein
     The cytoplasmic tail is from 1 to 124 (124 Residues)
Gavel: Examining the boundary of mitochondrial targeting seq.
      motif at: 54
     CRAWVP
Discrimination of mitochondrial target seq.: 
     negative (-3.12)
Hydrophobic moment analysis for chloroplast proteins 
     Hmax:  8.56 at (56)
Disc.Score from Amino Acid Composition (chloroplast)
     score from the 3-11 region:  0.95
     score from the 1-31 region:  2.58
Chloroplast protein?  Status: negative (-8.78)

*** Reasoning Step: 2

Relative position of the cytoplasmic tail: 57%
     Larger value (>30%) is favared for ER memb. proteins
KDEL   Count: 0
Checking apolar signal for intramitochondrial sorting
Mitochondrial inner membrane?  Score:  0.10
Checking apolar signal for intrachloroplastic sorting
Howe: Checking the consensus for intrachloropl.sorting
Chloroplast thylakoid memb.?  Score: 0.122
SKL motif (signal for peroxisomal protein): 
     pos: -1(216), count: 0   
Amino Acid Composition Tendency for Peroxisome:   1.67
Peroxisomal proteins?   Status: notclr
     AAC score (peroxisome): 0.290
Checking the cytoplasmic tail of type II (Golgi)
Amino acid composition tendency for vacuolar proteins
     Score: -3.11  Status: negative
Checking the amount of Basic Residues (nucleus)
Checking the 4 residue pattern for Nuclear Targeting
Checking the 7 residue pattern for Nuclear Targeting
Checking the Robbins & Dingwall consensus (nucleus)
Checking the RNA binding motif (nucleus or cytoplasm)
Nuclear Signal   Status: negative ( 0.00)
Check mitochondrial signal for typeII (plasma memb.)
Type II is favored for plasma memb. proteins
Checking the NPXY motif..
Checking the YXRF motif..
Checking N-myristoylation..

----- Final Results -----

 endoplasmic reticulum (membrane) --- Certainty= 0.850(Affirmative) < succ>
                  plasma membrane --- Certainty= 0.440(Affirmative) < succ>
           microbody (peroxisome) --- Certainty= 0.290(Affirmative) < succ>
   chloroplast thylakoid membrane --- Certainty= 0.122(Affirmative) < succ>


----- The End -----